package com.scalableminds.webknossos.datastore

Get desktop application:
View/edit binary Protocol Buffers messages

Used in: SkeletonTracing, VolumeTracing

• required string name = 1

• required int32 index = 2

• required Vec2IntProto bounds = 3

Used in: AnnotationUserStateProto, Node, Segment, SkeletonTracing, VolumeTracing

• required string name = 1

• required int32 value = 2

Note that the edges are stored directed but semantically undirected. When testing for an edge, check both directions.

Used in: AgglomerateGraph

• required int64 source = 1

• required int64 target = 2

• repeated int64 segments = 1

• repeated AgglomerateEdge edges = 2

• repeated Vec3IntProto positions = 3

• repeated float affinities = 4

Used in: AnnotationProto

• required string tracingId = 1

• required string name = 2

• required AnnotationLayerTypeProto typ = 3

Used in: AnnotationLayerProto

• Skeleton = 1

• Volume = 2

• required string description = 1

  empty string encodes no description

• required int64 version = 2

• repeated AnnotationLayerProto annotationLayers = 3

• required int64 earliestAccessibleVersion = 4

• optional bool skeletonMayHavePendingUpdates = 5

  relevant only for annotations migrated by https://github.com/scalableminds/webknossos/pull/7917

• optional bool editableMappingsMayHavePendingUpdates = 6

  relevant only for annotations migrated by https://github.com/scalableminds/webknossos/pull/7917

• repeated AnnotationUserStateProto userStates = 7

Used in: AnnotationProto

• required string userId = 1

• required Vec3IntProto editPosition = 2

• required Vec3DoubleProto editRotation = 3

• required double zoomLevel = 4

• repeated AdditionalCoordinateProto editPositionAdditionalCoordinates = 5

Used in: NamedBoundingBoxProto, SkeletonTracing, VolumeTracing

• required Vec3IntProto topLeft = 1

• required int32 width = 2

• required int32 height = 3

• required int32 depth = 4

Used in: Tree

• required int32 nodeId = 1

• required int64 createdTimestamp = 2

Used in: NamedBoundingBoxProto, Segment, Tree

• required double r = 1

• required double g = 2

• required double b = 3

• required double a = 4

Used in: Tree

• required int32 nodeId = 1

• required string content = 2

Used in: Tree, TreeBody

• required int32 source = 1

• required int32 target = 2

• required string baseMappingName = 1

• required int64 createdTimestamp = 2

• required int64 largestAgglomerateId = 3

Used in: SkeletonUserStateProto, VolumeUserStateProto

• required int32 id = 1

• required bool value = 2

Used in: VolumeUserStateProto

• required int64 id = 1

• required bool value = 2

• repeated int64 items = 1

• repeated Vec3IntProto values = 1

Use exactly one of the value fields!

Used in: Segment, Tree

• required string key = 1

• optional string stringValue = 2

• optional bool boolValue = 3

• optional double numberValue = 4

• repeated string stringListValue = 5

Used in: SkeletonTracing, VolumeTracing

• required int32 id = 1

  Zero shouldn't be used as an id because it's reserved for the original user bounding box

• optional string name = 2

• optional bool isVisible = 3

• optional ColorProto color = 4

• required BoundingBoxProto boundingBox = 5

Used in: Tree, TreeBody

• required int32 id = 1

• required Vec3IntProto position = 2

• required Vec3DoubleProto rotation = 3

• required float radius = 4

• required int32 viewport = 5

• required int32 mag = 6

• required int32 bitDepth = 7

• required bool interpolation = 8

• required int64 createdTimestamp = 9

• repeated AdditionalCoordinateProto additionalCoordinates = 10

Used in: VolumeTracing

• required int64 segmentId = 1

• optional Vec3IntProto anchorPosition = 2

• optional string name = 3

• optional int64 creationTime = 4

• optional ColorProto color = 5

• optional int32 groupId = 6

• repeated AdditionalCoordinateProto anchorPositionAdditionalCoordinates = 7

• repeated MetadataEntryProto metadata = 11

• optional bool isVisible = 12

Used in: SegmentToAgglomerateChunkProto

• required int64 segmentId = 1

• required int64 agglomerateId = 2

Used in: VolumeTracing

• required string name = 1

• required int32 groupId = 2

• repeated SegmentGroup children = 3

• optional bool isExpanded = 4

• repeated SegmentAgglomeratePair segmentToAgglomerate = 1

Used in: SkeletonTracingOpt

• required string datasetName = 1

  used when parsing and handling nmls, not used in tracing store anymore, do not rely on correct values

• repeated Tree trees = 2

• required int64 createdTimestamp = 3

• optional BoundingBoxProto boundingBox = 4

• optional int32 activeNodeId = 5

• required Vec3IntProto editPosition = 6

• required Vec3DoubleProto editRotation = 7

• required double zoomLevel = 8

• required int64 version = 9

• optional BoundingBoxProto userBoundingBox = 10

• repeated TreeGroup treeGroups = 11

• repeated NamedBoundingBoxProto userBoundingBoxes = 12

• optional string organizationId = 13

  used when parsing and handling nmls, not used in tracing store anymore, do not rely on correct values

• repeated AdditionalCoordinateProto editPositionAdditionalCoordinates = 21

• repeated AdditionalAxisProto additionalAxes = 22

  Additional axes for which this tracing is defined

• optional bool storedWithExternalTreeBodies = 23

  Only set to true on storing. If false, all trees will be stored

• repeated SkeletonUserStateProto userStates = 24

Used in: SkeletonTracings, SkeletonTracingsWithIds

• optional SkeletonTracing tracing = 1

• repeated SkeletonTracingOpt tracings = 1

• repeated SkeletonTracingOpt tracings = 1

• repeated StringOpt annotationId = 2

• repeated StringOpt tracingId = 3

Used in: SkeletonTracing

• required string userId = 1

• optional int32 activeNodeId = 2

• repeated Id32WithBool treeGroupExpandedStates = 3

• repeated Id32WithBool boundingBoxVisibilities = 4

• repeated Id32WithBool treeVisibilities = 5

Used in: SkeletonTracingsWithIds

• optional string stringValue = 1

Used in: SkeletonTracing

• required int32 treeId = 1

• repeated Node nodes = 2

  empty for skeletons with storedWithExternalTreeBodies=true

• repeated Edge edges = 3

  empty for skeletons with storedWithExternalTreeBodies=true

• optional ColorProto color = 4

• repeated BranchPoint branchPoints = 5

• repeated Comment comments = 6

• required string name = 7

• required int64 createdTimestamp = 8

• optional int32 groupId = 9

• optional bool isVisible = 10

  `None` means `true`

• optional TreeTypeProto type = 11

• optional bool edgesAreVisible = 12

  `None` means `true`

• repeated MetadataEntryProto metadata = 13

• optional TreeAgglomerateInfoProto agglomerateInfo = 14

Used in: Tree

• required int64 agglomerateId = 1

• optional string tracingId = 2

• optional string mappingName = 3

• repeated Node nodes = 1

• repeated Edge edges = 2

Used in: SkeletonTracing

• required string name = 1

• required int32 groupId = 2

• repeated TreeGroup children = 3

• optional bool isExpanded = 4

Used in: Tree

• DEFAULT = 0

• AGGLOMERATE = 1

Used in: AdditionalAxisProto

• required int32 x = 1

• required int32 y = 2

Used in: AnnotationUserStateProto, Node, SkeletonTracing, VolumeTracing

• required double x = 1

• required double y = 2

• required double z = 3

Used in: AgglomerateGraph, AnnotationUserStateProto, BoundingBoxProto, ListOfVec3IntProto, Node, Segment, SkeletonTracing, VolumeTracing

• required int32 x = 1

• required int32 y = 2

• required int32 z = 3

Used in: VolumeTracingOpt

• optional int64 activeSegmentId = 1

• required BoundingBoxProto boundingBox = 2

• required int64 createdTimestamp = 3

• required string datasetName = 4

  used when parsing and handling nmls, not used in tracing store anymore, do not rely on correct values

• required Vec3IntProto editPosition = 5

• required Vec3DoubleProto editRotation = 6

• required VolumeTracing.ElementClassProto elementClass = 7

• optional string fallbackLayer = 8

• optional int64 largestSegmentId = 9

• required int64 version = 10

• required double zoomLevel = 11

• optional BoundingBoxProto userBoundingBox = 12

• repeated NamedBoundingBoxProto userBoundingBoxes = 13

• optional string organizationId = 14

  used when parsing and handling nmls, not used in tracing store anymore, do not rely on correct values

• repeated Vec3IntProto mags = 15

• repeated Segment segments = 16

• optional string mappingName = 17

  either a mapping present in the fallback layer, or an editable mapping on the tracingstore

• optional bool hasEditableMapping = 18

  the selected mapping is an editable mapping

• repeated SegmentGroup segmentGroups = 19

• optional bool hasSegmentIndex = 20

• repeated AdditionalCoordinateProto editPositionAdditionalCoordinates = 21

• repeated AdditionalAxisProto additionalAxes = 22

  Additional axes for which this tracing is defined

• optional bool mappingIsLocked = 23

  user may not select another mapping (e.g. because they have already mutated buckets)

• optional bool volumeBucketDataHasChanged = 24

  The volume bucket data has been edited at least once

• optional bool UNUSED_hideUnregisteredSegments = 25

  Unused and not persisted. The fronted manages this itself and it initially defaults to false on every reload. If true, segments that are not registered will be hidden.

• repeated VolumeUserStateProto userStates = 26

Do not use with floating point element classes

Used in: VolumeTracing

• uint8 = 1

  field number equals byteCount + (unsigned ? 0 : 10).

• uint16 = 2

• uint24 = 3

• uint32 = 4

• uint64 = 8

• int8 = 11

• int16 = 12

• int32 = 14

• int64 = 18

Used in: VolumeTracings

• optional VolumeTracing tracing = 1

• repeated VolumeTracingOpt tracings = 1

Used in: VolumeTracing

• required string userId = 1

• optional int64 activeSegmentId = 2

• repeated Id32WithBool segmentGroupExpandedStates = 3

• repeated Id32WithBool boundingBoxVisibilities = 4

• repeated Id64WithBool segmentVisibilities = 5