Proto commits in theosanderson/taxonium

These 52 commits are when the Protocol Buffers files have changed:

Commit:e58e198
Author:Theo Sanderson

cpp initial

Commit:81daf46
Author:Theo Sanderson

Fix gene indexing in Node converter

Commit:828572b
Author:Theo Sanderson
Committer:GitHub

Upgrade lots of dependencies, move to Typescript, upgrade to React 19 (#700) Resolves #659 Moves to React 19, moves code to Typescript. Generally a huge change so something probably got broken without noticing - do let me know. Upgrading deck gl involved big changes: the multiple zoom axes thing built into deck gl now seems to work reliably (it had low precision in the past in our hands) so we've moved away from the model matrix approach and gone for this native approach.

This commit does not contain any .proto files.

Commit:10f0dd5
Author:Theo Sanderson

notwork

This commit does not contain any .proto files.

Commit:82a5c35
Author:Theo Sanderson
Committer:GitHub

UPDATE

The documentation is generated from this commit.

Commit:69ee4c5
Author:Theo Sanderson

renaming

Commit:a0967ba
Author:Theo Sanderson

renaming

Commit:9182fc8
Author:Theo Sanderson

update

Commit:6d21d78
Author:Theo Sanderson

create component

Commit:f1ff9c3
Author:Theo Sanderson

Precommit changes

Commit:902a14d
Author:Theo Sanderson
Committer:GitHub

rename

Commit:c8a165c
Author:Theo Sanderson
Committer:GitHub

updates

Commit:734fa88
Author:theosanderson

Refactor Former-commit-id: d402fb7dddcb8283af1ee415fb24176585b87b2e

Commit:2f99a80
Author:Theo Sanderson
Committer:GitHub

Timetree integration (#82) * updates * update * Everything working except mutations * SwiftTree preorder traversal bug * add data * updates * update ui Former-commit-id: 9fb8bb5cc945750d66f793938bd3616843c07dc6

Commit:0e5432a
Author:Theo Sanderson
Committer:GitHub

update Former-commit-id: d67cb9d47c68901be798b1334fd41c19273bc02a

Commit:a82a4b9
Author:Theo Sanderson
Committer:GitHub

Colourmapping (#80) * Update taxonium.proto * Make processing much faster, and add colour mapping protos * add colour mapping client stuff * fix CI Former-commit-id: 81f0005159259245ef65e99fb22c0ca4808ff42a

Commit:dd1cdb3
Author:Theo Sanderson
Committer:GitHub

Update taxonium.proto Former-commit-id: 197e3ead46519572743f7f24ef002de396444e66

Commit:796be34
Author:theosanderson

updates Former-commit-id: d9b40b866f17f6587b46ac24a54ff1bfe78f1323

Commit:9955d39
Author:Theo Sanderson
Committer:GitHub

taxonium rebrand (#74) * taxonium rebrand * one place not to change Former-commit-id: 6eee111999575a190d254c90e5c67e03a34a7a5d

Commit:de93a22
Author:theosanderson

taxonium rebrand Former-commit-id: 554444b06c185be4a3f07499b1d549b7428a8a17

Commit:34f4801
Author:Theo Sanderson
Committer:GitHub

Update taxodium.proto Former-commit-id: 1f9b9f00195f66e85fbf36dd4c8a8fbaa20cebb6

Commit:d2ddef8
Author:Theo Sanderson
Committer:GitHub

Update taxodium.proto Former-commit-id: aca7c6611d30c1be1d8bbc720073d68fae1bf399

Commit:807598a
Author:Theo Sanderson
Committer:GitHub

Update taxodium.proto Former-commit-id: 7274f9ce6deb77073a166369c14322182f3bc8df

Commit:a7db4da
Author:Theo Sanderson
Committer:GitHub

Update taxodium.proto Former-commit-id: 14403494364bb95615760d05b7e816cefad050fd

Commit:85b83ee
Author:theosanderson

Deploying to gh-pages from @ 686468fb27af8dc3a55c896245484e56db6076b0 [formerly 841e9f7199819a7a8d858a1be8023deac397d09f] 🚀 Former-commit-id: 913e2b5d30250a71d907ebe1442fc30e22d54a99

Commit:a22065c
Author:theosanderson

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Commit:d3bc5a9
Author:theosanderson

Deploying to gh-pages from @ 031df45b48705735e326055972150666f56899cd [formerly 4fb9aeedbada269b81b0a1ac7455ed2f6f776c41] 🚀 Former-commit-id: 34ae2ef9ce7ed6d3476693bc2e43a8b522918519

Commit:867c4b7
Author:theosanderson

Deploying to gh-pages from @ cbc19f39d7c94a9f6c237a1a3ddefef0ae019ae7 [formerly fa08ad304352a226858472b317f3848d11907144] 🚀 Former-commit-id: c55f6023c718fe4c45e44a408492107fd1a727bd

Commit:5e8647d
Author:theosanderson

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Commit:c89bb4a
Author:theosanderson

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Commit:54e6ccb
Author:Theo Sanderson
Committer:GitHub

Update taxodium.proto Former-commit-id: 5b25825ff85e0ee00d916cadb033497c9c0f479d

Commit:f124ef9
Author:Theo Sanderson
Committer:GitHub

Update taxodium.proto Former-commit-id: 5ff766c39b3a0f0d0ca521c5b5a6157bc6f9435e

Commit:0a443d2
Author:theosanderson

Deploying to gh-pages from @ 7a6fc608318b6fa13816c60f4aae78fc65005f3f [formerly 9ef607a41bbf6991f07c6ded44863be3cc992e39] 🚀 Former-commit-id: 2d3410c99af4ea38967fa3b62eceeba97599b209

Commit:5185d82
Author:Theo Sanderson
Committer:GitHub

Refactor metadata protos (#61) Former-commit-id: 9800a6b4ea1e561b4e433d54a13a350fbe300e9c

Commit:71312d4
Author:Theo Sanderson

Refactor metadata protos Former-commit-id: cdb22bd11e46d02c6d7c36c412f99d0a0650b60a

Commit:07c636a
Author:theosanderson

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Commit:9ad0132
Author:theosanderson

Deploying to gh-pages from @ 2ec4ed0e0a203c48a8269e8fb9e076189a6e9c6a [formerly 0af7fbe855b6b1a4d4882d51256effa03df0b98a] 🚀 Former-commit-id: 8f95b3be0e4c32fe56bd20427d9680a1f6142c83

Commit:56aa3a6
Author:theosanderson

Deploying to gh-pages from @ 7b2cf4f6708ad62edb7f6e6902f7c49debae16c6 [formerly 95639e9643896abf39a9e15a570d1feb74b25f8c] 🚀 Former-commit-id: 5b960d71207502b8e522ff381bcae25458123792

Commit:d92f670
Author:theosanderson

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Commit:9707f7f
Author:theosanderson

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Commit:406f153
Author:Theo Sanderson
Committer:GitHub

Update tree.proto Former-commit-id: 30216dbae485d78d34bd66f339cf5afe105f38c8

Commit:8af82a9
Author:theosanderson

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Commit:2a11403
Author:Theo Sanderson
Committer:GitHub

Update tree.proto Former-commit-id: 192b3b36ab33e904851e85473ed2bb615bb336a8

Commit:259f8a4
Author:theosanderson

Deploying to gh-pages from @ fe879a0b5b651d8d9ee36181b1b321b4e4146d6b [formerly 9afe506d3eb3cfbbb6ea8b5a813ad44a55a2dc1b] 🚀 Former-commit-id: f9d1083c2b303813ccd4f2c359d449bd40b7a0f7

Commit:25d1701
Author:theosanderson

Lot of progress Former-commit-id: 9aa53930fa40c27955d59e6615b4094f6825fa7e

Commit:2efe5e4
Author:theosanderson

Deploying to gh-pages from @ eff312a94ecbdd63e3df8ef30314dd7f076c216f [formerly 5df96e9c0f8a1aa6ff27c5a2653b6c380ce5aefe] 🚀 Former-commit-id: df53a16c295e42e581dd3b2471b7d89c27497f94

Commit:46e8399
Author:theosanderson

Lot of progress Former-commit-id: 3f9106f7adc3c76fa398db51994ac05f2ebb66e6

Commit:e3881c3
Author:theosanderson

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Commit:bcb424c
Author:theosanderson

Updates Former-commit-id: d53e25da6eb239a4478bb0077bd34c79aa059743

Commit:b98ae01
Author:theosanderson

updates Former-commit-id: e5beebbccd9ab463af194d1b8cc0d43ad7ffce35

Commit:afd4bb6
Author:theosanderson

updates Former-commit-id: a1168385144529809f82f855a4ad676355815b4e

Commit:68402cf
Author:theosanderson

Tree to protobuf Former-commit-id: 50797e934a81aff44fbbe6c61777cacb38277865